species:   Rhsol
pid:       PID0475
parent:    Rhi-milR-159
paralog:   
locus:     KB317706.1:61779-61891
matures:   ['UUAGUAGUUAGAUGUUGUAGG', 'UACAGCAUCUUGUCACCAUAG']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317706.1:61779-61891

8 out of bounds
34 alignments
27 proper strand
20 stranded perfect matches

                                         ************************       ************************                 
CAUGCCUUAAGCAUUGCCUCACUGUACUUAGGUAGCUCACCAACGCCUUACAGCAUCUUGUCACCAUAGUUUAGUAGUUAGAUGUUGUAGGGUGGUACCUUGCCGCCUUAAGC
.((((.....))))............(((((((.((.......(((((((((((((((....((.........))....))))))))))))))).......)).))).)))).
----------------------------------------------------------------------UUAGUAGUUAGAUGUUGUAGG---------------------- l=21 a=1 c
------------------------------------------------UACAGCAUCUUGUCACCAUAG-------------------------------------------- l=21 a=0 c*
---------------------------------------------------------------------UUUAGUAGUUAGAUGUUGUAGGGU-------------------- l=24 a=4 ma
------------------------------------------------UACAGCAUCUUGUCACCAUAG-------------------------------------------- l=21 a=0 ma*

-----------------------------------------------UUACAGCAUCUUGUCACCAUAG-------------------------------------------- l=22 a=1 
---------------------------------------------------------------------UUUAGcAGUUAGAUGUUGUAGGG--------------------- l=23 a=1 
---------------------------------------------------------------------UUUAGUAGUUAGAUGUUGUAGGG--------------------- l=23 a=2 
---------------------------------------------------------------------UUUAGUAGUUAGAUGUUGUAGGGU-------------------- l=24 a=4 (ma)
---------------------------------------------------------------------UUUAGUAGUUAGAUGUUGUAGGGUG------------------- l=25 a=1 
----------------------------------------------------------------------UUAGUAGUUAGAUGUUGUAGG---------------------- l=21 a=1 (c)
----------------------------------------------------------------------UUAGUAGUUAGAUGUUGUAGGG--------------------- l=22 a=3 
----------------------------------------------------------------------UUAGUAGUcAGAUGUUGUAGGG--------------------- l=22 a=3 
----------------------------------------------------------------------gUAGUAGUUAGAUGUUGUAGGGU-------------------- l=23 a=1 
----------------------------------------------------------------------UUAGUAGUUAGAUGUUGUAGGGU-------------------- l=23 a=3 
----------------------------------------------------------------------UUAGUAGUcAGAUGUUGUAGGGU-------------------- l=23 a=2 
------------------------------------------------------------------------AGUAGUUAGAUGUUGUAGGG--------------------- l=20 a=1 
--------------------------------------------------------------------------UAGUUAGAUGUUGUAGGGU-------------------- l=19 a=1 
--------------------------------------------------------------------------UAGUUAGAUGUUGUAGGGUGGU----------------- l=22 a=1 
--------------------------------------------------------------------------UAGUUAGAUGUUGUAGGGUGGUAC--------------- l=24 a=1 
-----------------------------------------------------------------------------UUAGAUGUUGUAGGGUGG------------------ l=18 a=1 

mb-01010
ax-1011011
ku-01
ss-111110101100
fn-101
